Morphologicals and molecular characteristics of regang prawn (Macrobrachium sintangense De Man, 1898) from Special Region of Yogyakarta

  • Rini Rahmawati Jurusan Biologi,Fakultas Biologi, Universitas Gadjah Mada
  • Rury Eprilurahman Fakultas Biologi, Universitas Gadjah Mada, Indonesia Jl. Teknika Selatan, Sekip Utara, Sleman, Daerah Istimewa Yogyakarta, Indonesia 55281
  • Lukman Hakim Fakultas Biologi, Universitas Gadjah Mada, Indonesia Jl. Teknika Selatan, Sekip Utara, Sleman, Daerah Istimewa Yogyakarta, Indonesia 55281
  • Tuty Arisuryanti Fakultas Biologi, Universitas Gadjah Mada, Indonesia Jl. Teknika Selatan, Sekip Utara, Sleman, Daerah Istimewa Yogyakarta, Indonesia 55281
  • Zuliyati Rohmah Fakultas Biologi, Universitas Gadjah Mada, Indonesia Jl. Teknika Selatan, Sekip Utara, Sleman, Daerah Istimewa Yogyakarta, Indonesia 55281
  • Trijoko Trijoko Fakultas Biologi, Universitas Gadjah Mada, Indonesia Jl. Teknika Selatan, Sekip Utara, Sleman, Daerah Istimewa Yogyakarta, Indonesia 55281

Abstract

Macrobrachium genus has many species members and distributed in various countries including Indonesia. One of the species belonging to the Macrobarachium genus that can be found in Indonesia was Macrobrachium sintangense or known as Sunda River Prawn. Identification of this species is important as an effort to expand studies on Sunda River Prawn in the Region of Yogyakarta. Identification of this species was carried out morphologically and molecularly with the 16S gene. The purpose of this study was to determine the morphological and molecular characters of M. sintangense. Morphological identification is done by identifying morphological, morphometric, and meristic characters according to the identification key. Molecular analysis was carried out by isolation, amplification, electrophoresis, and DNA visualization with UV illuminators, DNA sequencing by 1st Base. The results of this study indicate the morphological character of the rostrum slightly curved upwards or like a knife, rounded post antennular carapace, absent preanal carina, pubescene in the proximal half to two thirds of the chela. Morphologically, all samples were identified as members of the genus Macrobrachium. There are eight (8) specimens identifiable to the species level, as M. sintangense. The results of molecular identification of two (2) specimens showed a high similarity value and a close relationship with M. sintangense from GenBank samples and also close relationship with M. sintangense from Tukad Panti, Bali, Indonesia. The conclusion of this research is that morphologically and molecularly, the samples found in the Winongo.

Downloads

Download data is not yet available.

References

Arif IA, Khan HA. 2009. Molecular markers for biodiversity analysis of wildlife animals: a brief review. Animal Biodiversity and Conservation 32(1): 9–17.
Chace FA, Bruce AJ. 1993. The Caridean Shrimps (Crustacea: Decapoda) of the Albatross Philippine Expedition, 1907-1910, Part 6: Superfamily Palaemonoidea. Washington D. C.: Smithsonian Institution Press, pp. 20-22.
Chen J, Wu Y, Yang H, Bergelson J, Kreitman M, Tian D. 2009. Variation in the ratio of nucleotide substitution and indel rates across genomes in mammals and bacteria. Molecular Biology and Evolution 26(7): 1523–1531
De Jong MA, Wahlberg N, van Eijk M, Brakefield PM, Zwaan BJ. 2011. Mitochondrial DNA signature for range-wide populations of Bicyclus anynana suggests a rapid expansion from recent refugia. PloSONE 6(6): 1–5.
Fassler J, Cooper P. 2011. Blast Glossary. US. National Center for Biotechnology Information.P : 8
Hadiprata NLMIYS, Putra IMBAPA, Mahardika IGNK, Wandia IN, Nindhia TS. 2015. Identifikasi Spesies Ikan Kerapu di Pasar Ikan Karangasem dan Kedonganan Bali Menggunakan DNA Mitokondria Gen 16s rRNA. Jurnal Veteriner 16(3): 423-431
Holthuis LB. 1950. Preliminary descriptions of twelve new spesies of palaemonid prawns from american waters (Crustacea Decapoda). Proceedings Koninklijke Nederlandse Akademie van Wetenschappen 53: 93-99.
Jose D, Nidhin B, Kumar KPA, Pradeep PJ, Harikrishnan M. 2015. A molecular approach towards the taxonomy of fresh water prawns Macrobrachium striatum and M. equidens (Decapoda, Palaemonidae) using mitochondrial markers. Mitochondrial DNA. 1-9. DOI: 10.3109/19401736.2015. 1041114
Lyons DM, Lauring AS. 2017. Evidence for the selective basis of transitionto-transversion substitution bias in two RNA viruses. Molecular Biology and Evolution 34(12): 3205–3215.
Munasinghe DHN, Thushari GGN. 2010. Analysis of morphological variation of four populations of Macrobrachium rosenbergii (de Man, 1879) (Crustacea: Decapoda) in Sri Lanka. Cey. J. Sci. (Bio. Sci.) 39 (1): 53-60.
Nei M, Li W. 1979. Mathematical Model for Studying Genetic Variation in Terms of Restriction Endonucleases. Proceedings of the National Academy of Sciences of the United States of America 76(10): 5269–5273.
Page TJ, Hughes JM. 2011. Neither molecular nor morphological data have all the answers; with an example from Macrobrachium (Decapoda: Palaemonidae) from Australia. Zootaxa 2874: 65-68
Putranto TWC, Andriani R, Munawwaroh A, Irawan B, Soegianto A. 2014. Effect of cadmium on survival, osmoregulation and gill structure of the Sunda prawn, Macrobrachium sintangense (de Man), at different salinities. Marine and Freshwater Behaviour and Physiolog. 47(5): 349-360
Sharma C, Krishna G, Kumar AP, Nayak SK. 2014. Phylogeny of Macrobrachium spesies using mitochondrial rRNA ribosomal DNA. Cell Tissue Res. 14(3): 4525- 4529.
Wowor D, Cai Y, Ng PKL. 2004. Crustacea: Decapoda, Caridea. In: Yule, C.M., Sen, Y.H. (Eds.), Freshwater Invertebrates of the Malaysian Region. Academy of Sciences, Malaysia, Kuala Lumpur
Yang L, Tan Z, Wang D, Xue L, Guan M, Huang T, Li R. 2014. Spesies identification through mitochondrial rRNA genetic analysis. Scientific Reports 4: 4089. Doi: 10.1038/srep04089.
Published
2021-06-25
How to Cite
RAHMAWATI, Rini et al. Morphologicals and molecular characteristics of regang prawn (Macrobrachium sintangense De Man, 1898) from Special Region of Yogyakarta. Jurnal Biologi Udayana, [S.l.], v. 25, n. 1, p. 7-17, june 2021. ISSN 2599-2856. Available at: <https://ojs.unud.ac.id/index.php/bio/article/view/65159>. Date accessed: 05 nov. 2024. doi: https://doi.org/10.24843/JBIOUNUD.2021.v25.i01.p02.